Stem-loop hco-mir-5962

Accession

MI0020134

Description

Haemonchus contortus hco-mir-5962 precursor miRNA

Sequence

ggucucauucgucuaccuuagcgcuccgggugcagcgcccaucgcaucggcugaaggagacccAGUGGGAUAGGCGCUGCACUCAGAgcgccgagguagaucuguccccc
((...((...(((((((((.((((((.((((((((((((.(((.(((.((((.....)).))..))).))).)))))))))))).)))))).))))))))).))...)).

Structure

-  ucu  uuc         a      c            c   g   -c  -  g 
 gg   ca   gucuaccuu gcgcuc gggugcagcgcc auc cau  gg cu a
 ||   ||   ||||||||| |||||| |||||||||||| ||| |||  || || a
 cc   gu   uagauggag cgcgAG CUCACGUCGCGG UAG GUG  cc ga g
c  ccu  --c         c      A            A   G   Ac  a  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5962

• Accession: MIMAT0023466
• Description: Haemonchus contortus hco-miR-5962 mature miRNA
• Sequence: 64 - AGUGGGAUAGGCGCUGCACUCAGA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4