Stem-loop hco-mir-5957

Accession

MI0020128

Description

Haemonchus contortus hco-mir-5957 precursor miRNA

Sequence

caagucaugacguuggucaaggagugccuggacugcucuauauuuagguGGUCAGGGCGAUACUUCAAGCAGGucagggguuu
.((.((.((((.(((.(...(((((((((.((((((.(((....))))))))).))))...))))).).))))))).)).)).

Structure

c  g  a    g   g caa     ---    g      u   u 
 aa uc ugac uug u   ggagu   gccu gacugc cua a
 || || |||| ||| |   |||||   |||| |||||| |||  
 uu gg acuG GAC A   CUUCA   CGGG CUGGug gau u
u  g  g    -   G --A     UAG    A      -   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5957

• Accession: MIMAT0023460
• Description: Haemonchus contortus hco-miR-5957 mature miRNA
• Sequence: 50 - GGUCAGGGCGAUACUUCAAGCAGG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4