Stem-loop hco-mir-40a

Accession

MI0020113

Description

Haemonchus contortus hco-mir-40a precursor miRNA

Sequence

accgggaaaacucacuguaagaccauccaguaaagcaucgcaagacuUCACCGGGUGUCUUGCAGUGAGauuuuagaau
.....((((.(((((((((((((.((((.((.(((..((....))))).)).))))))))))))))))).)))).....

Structure

accgg    a             c    a  a   ca  g 
     gaaa cucacuguaagac aucc gu aag  uc c
     |||| ||||||||||||| |||| || |||  ||  
     uuuu GAGUGACGUUCUG UGGG CA Uuc  ag a
uaaga    a             -    C  C   --  a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-40a

• Accession: MIMAT0023444
• Description: Haemonchus contortus hco-miR-40a mature miRNA
• Sequence: 48 - UCACCGGGUGUCUUGCAGUGAG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4