Stem-loop hco-mir-5942

Accession

MI0020106

Description

Haemonchus contortus hco-mir-5942 precursor miRNA

Sequence

acgccacuuugguucgacucgaccucgcgguaacguagccauaGUGGACGCAGAUUGAAUCGACCuaagugguca
..(((((((.(((.(((.((((.((.(((...((.........))...))))).)))).)))))).)))))))..

Structure

ac       u   u   c    c  c   gua  gua 
  gccacuu ggu cga ucga cu gcg   ac   g
  ||||||| ||| ||| |||| || |||   ||   c
  uggugaa CCA GCU AGUU GA CGC   UG   c
ac       u   -   A    A  -   AGG  aua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5942

• Accession: MIMAT0023437
• Description: Haemonchus contortus hco-miR-5942 mature miRNA
• Sequence: 44 - GUGGACGCAGAUUGAAUCGACC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4