Stem-loop hco-mir-2

Accession

MI0020084

Description

Haemonchus contortus hco-mir-2 precursor miRNA

Literature search

1 open access papers mention hco-mir-2
(3 sentences)

Sequence

cuguccucaacaccggcacggcacgucaaaguggugggugauuugucgacuugcucaUAUCACAGCCAGCUUUGAUGUGCuguaaugggcaaaggggcgucucuc
.((((((.....(((..((((((((((((((((((..(((((.((..........)).))))).)))).))))))))))))))..))).....))))))......

Structure

-----c      caaca   gc              -    gg     u  ucga 
      uguccu     ccg  acggcacgucaaag uggu  gugau ug    c
      ||||||     |||  |||||||||||||| ||||  ||||| ||     
      gcgggg     ggu  uguCGUGUAGUUUC ACCG  CACUA ac    u
cucucu      aaacg   aa              G    -A     U  ucgu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-2

• Accession: MIMAT0023415
• Description: Haemonchus contortus hco-miR-2 mature miRNA
• Sequence: 58 - UAUCACAGCCAGCUUUGAUGUGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4