Stem-loop hco-mir-5929

Accession

MI0020083

Description

Haemonchus contortus hco-mir-5929 precursor miRNA

Sequence

ccauuccucgaagguccccuggUGAAUCGCUUUGUUCACUUUCAUGGucagaagguccaguaguuaacauugcgguuuucuaguguucuuccgauuuuucuggu
(((....(((.(((..(.((((.(((((((..((((.(((....(((.(.....).)))..))).))))..))))))).)))).)..))).)))......))).

Structure

-   --uucc   a   uc c    U       UU    C   UUCA   u a 
 cca      ucg agg  c cugg GAAUCGC  UGUU ACU    UGG c g
 |||      ||| |||  | |||| |||||||  |||| |||    ||| | a
 ggu      agc uuc  g gauc uuuggcg  acaa uga    acc g a
u   cuuuuu   c   uu u    u       uu    u   --ug   u g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5929

• Accession: MIMAT0023414
• Description: Haemonchus contortus hco-miR-5929 mature miRNA
• Sequence: 23 - UGAAUCGCUUUGUUCACUUUCAUGG - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4