Stem-loop sha-mir-338

Accession

MI0019646

Description

Sarcophilus harrisii sha-mir-338 precursor miRNA

Sequence

cacgagcggccaugggggcagccucucccccaccaccacugcucaucuuggcuuuccuccccaacaauauccugaugcugagugagcggcacauagagacUCCAGCAUCAGUGAUUUUGUUGaagaggguggcugccggcuucuuccuga
..((.(((((((((((((.((...))))))).........(((......)))...((((..((((((.(((((((((((((((...............))).))))))))).))).))))))..))))))))))))))............

Structure

----------ca  a        gggggcagccucucccccaccaccacugcucaucuuggcuuu    cc      u   -         -   gagcgg 
            cg gcggccau                                          ccuc  caacaa auc cugaugcug agu      c
            || ||||||||                                          ||||  |||||| ||| ||||||||| |||      a
            gc cgucggug                                          ggag  GUUGUU UAG GACUACGAC Uca      c
aguccuucuucg  -        ------------------------------------------    aa      U   U         C   gagaua 

Annotation confidence Not enough data

Genome context

GL856847.1: 53405-53554 [+]

Mature sha-miR-338

• Accession: MIMAT0022818
• Description: Sarcophilus harrisii sha-miR-338 mature miRNA
• Sequence: 101 - UCCAGCAUCAGUGAUUUUGUUG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87