Stem-loop sha-mir-19b

Accession

MI0019636

Description

Sarcophilus harrisii sha-mir-19b precursor miRNA

Literature search

1 open access papers mention sha-mir-19b
(6 sentences)

Sequence

acaacuucaucgcaucuucucuucaaacuuuuaauuuaagcacuguucuaugguuaguuuugcagguuugcauccagcuguaugauauuucugcUGUGCAAAUCCAUGCAAAACUGACUGuggugguggaaagucaguagaaaaaaaugu
...........((((....(((.(..((((((........((((...(((((((((((((((((((((((((..((((..............)))))))))).)).))))))))))))))))).))))))))))..).))).....))))

Structure

acaacuucauc    -cuuc   u aa      aauuuaag    guu                 -  -      uc    uguaug 
           gcau     ucu c  acuuuu        cacu   cuaugguuaguuuugca gg uuugca  cagc      a
           ||||     ||| |  ||||||        ||||   ||||||||||||||||| || ||||||  ||||       
           ugua     aga g  ugaaag        gugg   gguGUCAGUCAAAACGU CC AAACGU  GUcg      u
-----------    aaaaa   u ac      --------    --u                 A  U      --    ucuuua 

Annotation confidence Not enough data

Genome context

GL849858.1: 3486496-3486645 [-]

Mature sha-miR-19b

• Accession: MIMAT0022809
• Description: Sarcophilus harrisii sha-miR-19b mature miRNA
• Sequence: 95 - UGUGCAAAUCCAUGCAAAACUGACUG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87