Stem-loop sha-mir-30c

Accession

MI0019635

Description

Sarcophilus harrisii sha-mir-30c precursor miRNA

Sequence

cucuucaggagacaaccaugauguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggcugggagagggcuguuuacuccuucugccauggaaaaccccagaugaacuucguaagaagacagcucucccugugggaggg
.((.((.((.(....(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))....).)).)).)).((((....))))....(((((((...)))))))

Structure

---------------------------------c  u  a  a acaa     au    ugu U       U   ACA         guga   c 
                                  uc uc gg g    ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
                                  || || || |    |||||  ||||   | ||||||| |||   |||||||||    ||| a
                                  ag ag cc c    gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
gggagggugucccucucgacagaagaaugcuuca  u  a  c aaaa     --    uuc u       c   --a         ----   a 

Annotation confidence Not enough data

Genome context

GL849784.1: 539136-539285 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-30c

Mature sha-miR-30c

• Accession: MIMAT0022808
• Description: Sarcophilus harrisii sha-miR-30c mature miRNA
• Sequence: 31 - UGUAAACAUCCUACACUCUCAGCU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87