Stem-loop sha-mir-7

Accession

MI0019620

Description

Sarcophilus harrisii sha-mir-7 precursor miRNA

Sequence

uuauauagagccuguagaaaauauggaagauuucauuggauauuggccuaguucuguguggaagacuagugauuuuguuguuuuuagauaacuaaaacgaCAACAAAUCACAGUCUGCCAUauggcacaggccaugccucuacaggauaa
..........((((((((....(((((....))))).((....((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).))))))))..))))))))))....

Structure

uuauauagag        aaauauggaagauuucauu  auau      a  u        a     a       u      --     a 
          ccuguaga                   gg    uggccu gu cugugugg agacu gugauuu guuguu  uuuag u
          ||||||||                   ||    |||||| || |||||||| ||||| ||||||| ||||||  |||||  
          ggacaucu                   cc    accgga ca gguaUACC UCUGA CACUAAA CAACag  aaauc a
------aaua        -------------------  --gu      -  c        G     -       -      ca     a 

Annotation confidence Not enough data

Genome context

GL841540.1: 2528669-2528818 [+]

Mature sha-miR-7

• Accession: MIMAT0022793
• Description: Sarcophilus harrisii sha-miR-7 mature miRNA
• Sequence: 101 - CAACAAAUCACAGUCUGCCAU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87