Stem-loop ola-mir-24b

Accession

MI0019526

Description

Oryzias latipes ola-mir-24b precursor miRNA

Sequence

gcugcugcuugggcucaaccuccagUGCCUACUGAGCUGAUAACAGUuuuaccugaaacaaguacUGGCUCAGUUCAGCAGGAaccggaguuaggcccucuagagac
((....))..(((((.(((.(((.((.(((.(((((((((...((((................))))..))))))))).))).)).)))))).))))).........

Structure

gcugcugcuu     c   c   a  G   A         UAA    uuuaccu 
          gggcu aac ucc gU CCU CUGAGCUGA   CAGU       g
          ||||| ||| ||| || ||| |||||||||   ||||        
          cccgg uug agg ca GGA GACUUGACU   GUca       a
-cagagaucu     a   -   c  A   C         -CG    ugaacaa 

Annotation confidence Not enough data

Genome context

17: 29776748-29776854 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-24b

Mature ola-miR-24b-5p

• Accession: MIMAT0022644
• Description: Oryzias latipes ola-miR-24b-5p mature miRNA
• Sequence: 26 - UGCCUACUGAGCUGAUAACAGU - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-24b-3p

• Accession: MIMAT0022645
• Description: Oryzias latipes ola-miR-24b-3p mature miRNA
• Sequence: 66 - UGGCUCAGUUCAGCAGGA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8