Stem-loop ola-mir-1-1

Accession

MI0019437

Description

Oryzias latipes ola-mir-1-1 precursor miRNA

Literature search

3 open access papers mention ola-mir-1-1
(17 sentences)

Sequence

gacagcggccugcuugggggACAUACUUCUUUAUAUGCCCAUaugaacacgagcaacuaUGGAAUGUAAAGAAGUAUGUAucccagguugggagaaaugac
.....(..((.((((((((.((((((((((((((((..(((((((........))..))))).)))))))))))))))).)))))))).))..).......

Structure

--gacag gg  u        g                GC     --  aac 
       c  cc gcuugggg ACAUACUUCUUUAUAU  CCAUa  ug   a
       |  || |||||||| ||||||||||||||||  |||||  ||    
       g  gg uggacccu UGUAUGAAGAAAUGUA  GGUau  ac   c
caguaaa ag  u        A                -A     ca  gag 

Annotation confidence Not enough data

Genome context

7: 5261661-5261761 [+]

Mature ola-miR-1-5p

• Accession: MIMAT0022557
• Description: Oryzias latipes ola-miR-1-5p mature miRNA
• Sequence: 21 - ACAUACUUCUUUAUAUGCCCAU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-1-3p

• Accession: MIMAT0022558
• Description: Oryzias latipes ola-miR-1-3p mature miRNA
• Sequence: 60 - UGGAAUGUAAAGAAGUAUGUA - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8