Stem-loop bra-MIR5725

Accession

MI0019338

Description

Brassica rapa bra-MIR5725 precursor miRNA

Literature search

1 open access papers mention bra-MIR5725
(1 sentences)

Sequence

aagguaucuucuuuacguuaacaaauaguauacgaugcagaucagauugugccaaaucuaaaaauuacuuaagaacacacauaugucaauucauaaucagccaugguauuaacauaugugugugcuuaaguaauuuuuagAUUUGGCACAAUCUGAUCUGCaucguauacuauuuguuaggauuauaucuuaggaaaauuaggaa
(((((((..(((......(((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((.(((((((........)))).))).)))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..)))))))..............

Structure

--------------       cu   uuacgu                                                       a            c   -    aau 
              aagguau  ucu      uaacaaauaguauacgaugcagaucagauugugccaaaucuaaaaauuacuuaag acacacauaugu aau ucau   c
              |||||||  |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
              uucuaua  agg      auuguuuaucauaugcuaCGUCUAGUCUAACACGGUUUAgauuuuuaaugaauuc uguguguauaca uua ggua   a
aaggauuaaaagga       uu   ------                                                       g            a   u    ccg 

Annotation confidence Low

Genome context

chrA8: 5349176-5349380 [+]

Mature bra-miR5725

• Accession: MIMAT0023024
• Description: Brassica rapa bra-miR5725 mature miRNA
• Sequence: 141 - AUUUGGCACAAUCUGAUCUGC - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038