Stem-loop bra-MIR5720

Accession

MI0019332

Description

Brassica rapa bra-MIR5720 precursor miRNA

Literature search

1 open access papers mention bra-MIR5720
(1 sentences)

Sequence

aaacuuguaaaagaaaaucaucguacaguuaaaauuucuacgauaauucauucgaaguuuugcaauuaauguuauacagauauucuaaccaaaucacaaaaccauaauacuguauaccuauauaucucgucuaaaagcugcauaucuaguagugaaauauauagguauacuauacaguauuaugguuUUGUGAUUUGGUUGGAAUAUCuguauaacauuugcaaaacuuuaaaugaauuaucguggaauuuuuaacuguacgaugauuuucuuuuacgaguuuucuucuu
((((((((((((((((((((((((((((((((((.(((((((((((((((((.((((((((((((...(((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((.(((..((........))..)))))).))))))))))).....)))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))).)))))))))))))))))))))))))))))))))).......

Structure

-------                                  u                 c            uua                                              -----           c   u   aa  cug 
       aaacuuguaaaagaaaaucaucguacaguuaaaa uucuacgauaauucauu gaaguuuugcaa   auguuauacagauauucuaaccaaaucacaaaaccauaauacugua     uaccuauauau ucg cua  ag   c
       |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||| ||| |||  ||    
       uuugagcauuuucuuuuaguagcaugucaauuuu aaggugcuauuaaguaa uuucaaaacguu   uacaauauguCUAUAAGGUUGGUUUAGUGUUuugguauuaugacau     auggauauaua agu gau  uc   a
uucuucu                                  u                 a            ---                                              aucau           a   -   ga  uau 

Annotation confidence Low

Genome context

chrA9: 640193-640482 [+]

Mature bra-miR5720

• Accession: MIMAT0023018
• Description: Brassica rapa bra-miR5720 mature miRNA
• Sequence: 188 - UUGUGAUUUGGUUGGAAUAUC - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038