Stem-loop bra-MIR5719

Accession

MI0019331

Description

Brassica rapa bra-MIR5719 precursor miRNA

Literature search

2 open access papers mention bra-MIR5719
(2 sentences)

Sequence

ugaucucucuugcuucuaaauuuuuuuagaucuagugUUGUGAUGAUAAUACGACUUCcaagauccaaaccaacaaauuucuaaucgacaucaucaagcaugagucauggugaccauguugaaacuuguugauuuagucauggaagucggauuaucaucacaacacaagaucaaaaaaaacuuuuaaaaagcaaagugggauca
(((((((.(((((((.(((((((((((.(((((.(((((((((((((((..(((((((((.(((..................((((((((......((((((.((((...))))))))))......))))))))..))).)))))))))..))))))))))))))).))))).)))))))..))))..)))).))).)))))))

Structure

       u   -    -c    --       a     a               UA         a   ccaaaccaacaaauuucu        ucauca      a    u 
ugaucuc cuu gcuu  uaaa  uuuuuuu gaucu gugUUGUGAUGAUAA  CGACUUCca gau                  aaucgaca      agcaug guca  
||||||| ||| ||||  ||||  ||||||| ||||| |||||||||||||||  ||||||||| |||                  ||||||||      |||||| |||| g
acuaggg gaa cgaa  auuu  aaaaaaa cuaga cacaacacuacuauu  gcugaaggu cug                  uuaguugu      uuguac cagu  
       u   a    aa    uc       a     a               ag         a   ----------------au        ucaaag      -    g 

Annotation confidence Low

Genome context

chrA3: 30606326-30606529 [-]

Mature bra-miR5719

• Accession: MIMAT0023017
• Description: Brassica rapa bra-miR5719 mature miRNA
• Sequence: 38 - UUGUGAUGAUAAUACGACUUC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038