Stem-loop bra-MIR5717

Accession

MI0019328

Description

Brassica rapa bra-MIR5717 precursor miRNA

Literature search

1 open access papers mention bra-MIR5717
(1 sentences)

Sequence

ucucucucucucucuaugauccccaGUUUGGAUUGUUUGCCUUGGCuucauucaccaucuucacuaacguuaccugccaaggcaaacaauccaaacuggggaucuuagaaga
........(((.((((.(((((((((((((((((((((((((((((.............................))))))))))))))))))))))))))))).)))))))

Structure

ucucucuc   c    u                             uucauucaccauc 
        ucu ucua gauccccaGUUUGGAUUGUUUGCCUUGGC             u
        ||| |||| |||||||||||||||||||||||||||||             u
        aga agau cuaggggucaaaccuaacaaacggaaccg             c
--------   -    u                             uccauugcaauca 

Annotation confidence Low

Genome context

chrA6: 17555972-17556083 [+]

Mature bra-miR5717

• Accession: MIMAT0023014
• Description: Brassica rapa bra-miR5717 mature miRNA
• Sequence: 26 - GUUUGGAUUGUUUGCCUUGGC - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038