Stem-loop bra-MIR5715

Accession

MI0019326

Description

Brassica rapa bra-MIR5715 precursor miRNA

Sequence

guauuagaucauuACGUGAUAAGCCUCUGAAGAAagacguugggccuucccucaguuaagcucaagucgccagcugcuucaaaacaaagaccugcaacugguaacaaacucagucaaugggaaaagaagaacagagaaagaagacaagcguacgucuucuucagaagcuuaucggguaaugaucua
....(((((((((((.((((((((.(((((((((.(((((.(.((((((.(((.(((...((...((.(((((.(((.((........))...))).))))).))...((((.....))))...))...))).)))...))))....)).))))))))))))))).)))))))).)))))))))))

Structure

guau           G        C         a     u g  ----    --c   a   aag  ----------------caa  c     c   --u  aaa 
    uagaucauuAC UGAUAAGC UCUGAAGAA gacgu g gc    cuuc   cuc guu   cu                   gu gccag ugc   uc   a
    ||||||||||| |||||||| ||||||||| ||||| | ||    ||||   ||| |||   ||                   || ||||| |||   ||    
    aucuaguaaug gcuauucg agacuucuu cugca u cg    gaag   gag caa   ga                   ca ugguc acg   ag   c
----           g        a         -     - g  aaca    aaa   a   gaa  aaaggguaacugacucaaa  a     a   ucc  aaa 

Annotation confidence Low

Genome context

chrA8: 11797752-11797937 [+]

Mature bra-miR5715

• Accession: MIMAT0023012
• Description: Brassica rapa bra-miR5715 mature miRNA
• Sequence: 14 - ACGUGAUAAGCCUCUGAAGAA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038