Stem-loop gma-MIR5677

Accession

MI0019277

Description

Glycine max gma-MIR5677 precursor miRNA

Sequence

1682 reads, 35.0 reads per million, 166 experiments

cacgacagccacugaacuuggucaaaaaccaaauucucaggaauauuauucauguacaaagaaggccacuggaagcaccagucaugagagUAGAUUGCAUGGUUUUUAgucuucugaaaaagaggggaaagagagcaaggacauuggaggaaguuguuaauagagauuucaugguaaaugauaucuuugaagaUUUGGUCUUUAAUCAAGCUGAaugguuuugu
.((((.(((((.(.(.((((((.(((.((((((((.(((((.((((((((((((((.........(.(((((.....)))))...).........))))))((((((..((((((.......))))))..)))))).............((((((.........))))))......)))))))).))))).)))))))).))).)))))).).).)))))))))

Structure

c    c     c g a      c   a        c     a        ---------------------------------------------------------------------------      caaagaagg --c     a 
 acga agcca u a cuuggu aaa accaaauu ucagg auauuauu                                                                           caugua         c   acugg a
 |||| ||||| | | |||||| ||| |||||||| ||||| ||||||||                                                                           ||||||         |   ||||| g
 uguu uuggu A U GAACUA UUU UGGUUUag aguuu uauaguaa                                                                           GUACGU         g   ugacc c
-    -     a G C      A   C        a     c        augguacuuuagagauaauuguugaaggagguuacaggaacgagagaaaggggagaaaaagucuucugAUUUUUG      UAGAUgaga uac     a 

Annotation confidence Not enough data

Genome context

chr2: 14817220-14817443 [-]

Mature gma-miR5677-5p

• Accession: MIMAT0054277
• Description: Glycine max gma-miR5677-5p mature miRNA
• Sequence: 91 - UAGAUUGCAUGGUUUUUA - 108
• Evidence: experimental ; unknown

Mature gma-miR5677-3p

• Accession: MIMAT0022465
• Description: Glycine max gma-miR5677-3p mature miRNA
• Sequence: 194 - UUUGGUCUUUAAUCAAGCUGA - 214
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5