Stem-loop gma-MIR4387e

Accession

MI0019276

Description

Glycine max gma-MIR4387e precursor miRNA

Literature search

2 open access papers mention gma-MIR4387e
(2 sentences)

Sequence

20278 reads, 81.0 reads per million, 177 experiments

acaaauggaguguuauauuaUCACGCCUAAUCACUGACGCaucauugucacaucauugaaggugaaggcgugacaaugaggUGUUAGUGAUAAGGCGUGAUGaugugauuuguuauaucauc
....((((...(((((((((((((((((.(((((((((((.((((((((((.((.((......)).)).)))))))))).))))))))))).)))))))))))))))))...))))......

Structure

--acaa    agu                 A           a          a  a  ga 
      augg   guuauauuaUCACGCCU AUCACUGACGC ucauugucac uc uu  a
      ||||   ||||||||||||||||| ||||||||||| |||||||||| || ||   
      uauu   uaguguaGUAGUGCGGA UAGUGAUUGUg aguaacagug gg ag  g
cuacua    guu                 A           g          c  a  ug 

Annotation confidence High

Genome context

chr3: 23234500-23234621 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4387e

Mature gma-miR4387e-5p

• Accession: MIMAT0054276
• Description: Glycine max gma-miR4387e-5p mature miRNA
• Sequence: 21 - UCACGCCUAAUCACUGACGC - 40
• Evidence: experimental ; unknown

Mature gma-miR4387e-3p

• Accession: MIMAT0022464
• Description: Glycine max gma-miR4387e-3p mature miRNA
• Sequence: 82 - UGUUAGUGAUAAGGCGUGAUG - 102
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5