Stem-loop gma-MIR5676

Accession

MI0019274

Description

Glycine max gma-MIR5676 precursor miRNA

Sequence

2404 reads, 13.0 reads per million, 120 experiments

cugccccuccUCGACACCAUAUGUAGAGGCAGcggaggaaucauuggaaacaacuuuccaauccuucgaggugguaaguugugccucuguguaaacaaguCCAUUGCUACCUUGUUUCUuuaaugcgguccugaugguggcgcggg
((((.((.(((((..(((.(((..(((((((.(((((((....(((((((....))))))))))))))(((((((((..((.((...(((....))).)).))))))))))))))))))...))).)))..))).)).)).)))).

Structure

-    c  u  -   AC   A   -GU       Gcggaggaaucauuggaaacaacuuuccaauccuucg         gu  u  cuc   g 
 cugc cc cc UCG  ACC UAU   AGAGGCA                                     aggugguaa  ug gc   ugu u
 |||| || || |||  ||| |||   |||||||                                     |||||||||  || ||   |||  
 ggcg gg gg agu  ugg gua   UCUUUGU                                     UCCAUCGUU  AC ug   aca a
g    c  u  u   cc   c   auu       -------------------------------------         --  C  --a   a 

Annotation confidence Medium

Genome context

chr8: 27954774-27954919 [-]

Mature gma-miR5676-5p

• Accession: MIMAT0022462
• Description: Glycine max gma-miR5676-5p mature miRNA
• Sequence: 11 - UCGACACCAUAUGUAGAGGCAG - 32
• Evidence: experimental ; Illumina [1], RT-PCR [1]

Mature gma-miR5676-3p

• Accession: MIMAT0054274
• Description: Glycine max gma-miR5676-3p mature miRNA
• Sequence: 101 - CCAUUGCUACCUUGUUUCU - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5