Stem-loop gma-MIR5675

Accession

MI0019272

Description

Glycine max gma-MIR5675 precursor miRNA

Sequence

4083 reads, 84.0 reads per million, 178 experiments

cgugauuuuugucUCCAUUGCUGUUGUCUCUAUCucaaauuucuuuuuuggugucugaguuaggguucuuaaaauuuuuauuugcauuauauuugcgucuuauaauaauugaauauaggaugaaucuuuguauagcaaauuacuauaagaagcggauuacuaucagaugcaaauaaaaaguucaggaaccuuaucucagacaccaaaaaucaaaucaagaUAGAGACGACAACAAUGGAAAcaaaaaucac
.(((((((((((.(((((((.((((((((((((((...((((..(((((((((((((((.((((((((((....((((((((((((((..((((((.(((((((.(((((...((((.((.......)).))))...))))).))))))).))))))........))))))))))))))....)))))))))).)))))))))))))))..))))..)))))))))))))).))))))).)))))))))))

Structure

c           c       C              caa    cu               u          aaaa              ------au      g       a     gaa    g  ug 
 gugauuuuugu UCCAUUG UGUUGUCUCUAUCu   auuu  uuuuuggugucugag uaggguucuu    uuuuuauuugcauu        auuugc ucuuaua uaauu   uaua ga  a
 ||||||||||| ||||||| ||||||||||||||   ||||  ||||||||||||||| ||||||||||    ||||||||||||||        |||||| ||||||| |||||   |||| ||  a
 cacuaaaaacA AGGUAAC ACAGCAGAGAUaga   uaaa  aaaaaccacagacuc auuccaagga    aaaaauaaacguag        uaggcg agaauau auuaa   auau uu  u
-           A       A              -ac    cu               u          cuug              acuaucau      a       c     acg    g  uc 

Annotation confidence High

Genome context

chr11: 70226-70476 [+]

Mature gma-miR5675-5p

• Accession: MIMAT0054272
• Description: Glycine max gma-miR5675-5p mature miRNA
• Sequence: 14 - UCCAUUGCUGUUGUCUCUAUC - 34
• Evidence: experimental ; unknown

Mature gma-miR5675-3p

• Accession: MIMAT0022460
• Description: Glycine max gma-miR5675-3p mature miRNA
• Sequence: 221 - UAGAGACGACAACAAUGGAAA - 241
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5