Stem-loop gma-MIR2111a

Accession

MI0019269

Description

Glycine max gma-MIR2111a precursor miRNA

Literature search

6 open access papers mention gma-MIR2111a
(29 sentences)

Sequence

126743 reads, 206.0 reads per million, 178 experiments

auugcuggguccggauuaggUAAUCUGCAUCCUGAGGUUUAggacaauauccuuuguuuuguuucuaGUCCUUGGGAUGCAGAUUACGucuuccuugccagcacugua
..((((((....(((..(.((((((((((((((((((.(((((((((...........))).)))))).)))))))))))))))))).)..)))...)))))).....

Structure

---au      gucc   uu g                  U      -   uauc 
     ugcugg    gga  a gUAAUCUGCAUCCUGAGG UUAgga caa    c
     ||||||    |||  | |||||||||||||||||| |||||| |||    u
     acgacc    ccu  u CAUUAGACGUAGGGUUCC Gaucuu guu    u
auguc      -guu   uc G                  U      u   uugu 

Annotation confidence High

Genome context

chr1: 33084345-33084452 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR2111a

Mature gma-miR2111a-5p

• Accession: MIMAT0054270
• Description: Glycine max gma-miR2111a-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUA - 41
• Evidence: experimental ; unknown

Mature gma-miR2111a-3p

• Accession: MIMAT0022457
• Description: Glycine max gma-miR2111a-3p mature miRNA
• Sequence: 68 - GUCCUUGGGAUGCAGAUUACG - 88
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5