Stem-loop gma-MIR5037d

Accession

MI0019267

Description

Glycine max gma-MIR5037d precursor miRNA

Sequence

50056 reads, 129.0 reads per million, 177 experiments

uagucuuuuggugacCCUCAAAGGCUUCCACUACUucauuuuacgaucgauucaauaucgagaaacaugaaggugCGGGAGCCUAUGAAGGUUAACUaaaggaacu
...(((((((((((((.(((.((((((((.(..((((((.......(((((.....))))).....))))))..).)))))))).))).)))).)))))))))...

Structure

uag         -    C   A        A UA      uuuacga     u 
   ucuuuuggu gacC UCA AGGCUUCC C  CUucau       ucgau c
   ||||||||| |||| ||| |||||||| |  ||||||       ||||| a
   aggaaaUCA UUGG AGU UCCGAGGG g  gaagua       agcua a
uca         A    A   A        C ug      --caaag     u 

Annotation confidence Medium

Genome context

chr8: 47682569-47682674 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5037d

Mature gma-miR5037d-5p

• Accession: MIMAT0054269
• Description: Glycine max gma-miR5037d-5p mature miRNA
• Sequence: 16 - CCUCAAAGGCUUCCACUACU - 35
• Evidence: experimental ; unknown

Mature gma-miR5037d-3p

• Accession: MIMAT0022455
• Description: Glycine max gma-miR5037d-3p mature miRNA
• Sequence: 76 - CGGGAGCCUAUGAAGGUUAACU - 97
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5