Stem-loop gma-MIR5672

Accession

MI0019266

Description

Glycine max gma-MIR5672 precursor miRNA

Sequence

1278 reads, 12.0 reads per million, 169 experiments

caaaauccucucCAUUUCUUCCAUUACUAUAGUuuugggaaaauaaaugaaauggagauaugucacacauaauaauggagaguaucauuuauuucccgaaagCAUGGUAGUGGAAGAAAUGGAgaggaucugu
....((((((((((((((((((((((((((..((((((((((.(((((((.((.....(((((...)))))..........)).)))))))))))))))))..))))))))))))))))))))))))))....

Structure

caaa                          AG          a       a  -----ggaga     c 
    auccucucCAUUUCUUCCAUUACUAU  Uuuugggaaa uaaauga au          uaugu  
    ||||||||||||||||||||||||||  |||||||||| ||||||| ||          ||||| a
    uaggagAGGUAAAGAAGGUGAUGGUA  aaagcccuuu auuuacu ug          auaca  
uguc                          Cg          -       a  agagguaaua     c 

Annotation confidence High

Genome context

chr5: 11809060-11809192 [-]

Mature gma-miR5672-5p

• Accession: MIMAT0054268
• Description: Glycine max gma-miR5672-5p mature miRNA
• Sequence: 13 - CAUUUCUUCCAUUACUAUAGU - 33
• Evidence: experimental ; unknown

Mature gma-miR5672-3p

• Accession: MIMAT0022454
• Description: Glycine max gma-miR5672-3p mature miRNA
• Sequence: 103 - CAUGGUAGUGGAAGAAAUGGA - 123
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5