Stem-loop gma-MIR5670a

Accession

MI0019264

Description

Glycine max gma-MIR5670a precursor miRNA

Literature search

1 open access papers mention gma-MIR5670a
(2 sentences)

Sequence

304 reads, 7.0 reads per million, 63 experiments

uuggaguuuccaugaaacAAAUAUGGUAUGAUGUAAgggaaacauaaaaaccaaaguuagucgauuauaggguucaacuaacaucaguuuugauguuuccuuuaCAUCAUACCAUAUUUGCUUCAUagaaacuaca
....((((((.(((((.((((((((((((((((((((((((((((.(((((....((((((.((.........)).))))))....))))).)))))))))))))))))))))))))))).))))).))))))...

Structure

uugg      c     a                            a     caaa      c  uua 
    aguuuc augaa cAAAUAUGGUAUGAUGUAAgggaaacau aaaac    guuagu ga   u
    |||||| ||||| |||||||||||||||||||||||||||| |||||    |||||| ||   a
    ucaaag UACUU GUUUAUACCAUACUACauuuccuuugua uuuug    caauca cu   g
-aca      a     C                            g     acua      a  ugg 

Annotation confidence Not enough data

Genome context

chr1: 6401527-6401662 [+]

Mature gma-miR5670a-5p

• Accession: MIMAT0054266
• Description: Glycine max gma-miR5670a-5p mature miRNA
• Sequence: 19 - AAAUAUGGUAUGAUGUAA - 36
• Evidence: experimental ; unknown

Mature gma-miR5670a-3p

• Accession: MIMAT0022452
• Description: Glycine max gma-miR5670a-3p mature miRNA
• Sequence: 105 - CAUCAUACCAUAUUUGCUUCAU - 126
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5