Stem-loop gma-MIR5668

Accession

MI0019262

Description

Glycine max gma-MIR5668 precursor miRNA

Literature search

1 open access papers mention gma-MIR5668
(1 sentences)

Sequence

16736 reads, 35.0 reads per million, 168 experiments

ggaugcuuuggagauguuguaaucccuuuuuguuggaaguUUCUCUCACAUUUUCAAGAAAgcaagaggcuucaaaauggucAGCAAUGGAAUUAUAGACUGCgacagcaagu
...(((((((.((...(((((((.((...(((((((((((((((((..(........)..))..)))))))))........)))))).)).))))))).)).))).))))...

Structure

gga    -   g  aug       c  uuu      --------         --  CA AUU 
   ugcu uug ag   uuguaau cc   uuguug        gaaguUUCU  CU  C   U
   |||| ||| ||   ||||||| ||   ||||||        |||||||||  ||  |    
   acga agC UC   GAUAUUA GG   AACGAc        cuucggaga  gA  G   U
uga    c   G  --A       A  --U      ugguaaaa         ac  AA AAC 

Annotation confidence Low

Genome context

chr16: 29347569-29347681 [+]

Mature gma-miR5668-5p

• Accession: MIMAT0054265
• Description: Glycine max gma-miR5668-5p mature miRNA
• Sequence: 41 - UUCUCUCACAUUUUCAAGAAA - 61
• Evidence: experimental ; unknown

Mature gma-miR5668-3p

• Accession: MIMAT0022450
• Description: Glycine max gma-miR5668-3p mature miRNA
• Sequence: 83 - AGCAAUGGAAUUAUAGACUGC - 103
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5