Stem-loop cin-mir-5605

Accession

MI0019171

Description

Ciona intestinalis cin-mir-5605 precursor miRNA

Sequence

46 reads, 17 reads per million, 2 experiments

UCCCAUCUUAUCCCAUCCCACUauauauauauggUAGGAUGGGGGAAGAUGAGACAC
((.((((((.((((((((.((((((....)))))).)))))))).)))))).))...

Structure

---  C      A        C      u 
   UC CAUCUU UCCCAUCC ACUaua a
   || |||||| |||||||| ||||||  
   AG GUAGAA GGGGUAGG Ugguau u
CAC  A      G        A      a 

Annotation confidence Not enough data

Genome context

8q: 1676243-1676299 [-]

Mature cin-miR-5605-5p

• Accession: MIMAT0022337
• Description: Ciona intestinalis cin-miR-5605-5p mature miRNA
• Sequence: 1 - UCCCAUCUUAUCCCAUCCCACU - 22
• Evidence: not_experimental

Mature cin-miR-5605-3p

• Accession: MIMAT0022338
• Description: Ciona intestinalis cin-miR-5605-3p mature miRNA
• Sequence: 35 - UAGGAUGGGGGAAGAUGAGACAC - 57
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52