Stem-loop cin-mir-5596a

Accession

MI0019160

Description

Ciona intestinalis cin-mir-5596a precursor miRNA

Sequence

162 reads, 58 reads per million, 2 experiments

CUAGUCUUUCCCCGUUCUACUacaguuuauauaaacuguguaaaguacagUAGGGUGGGGGAAGAUGGGAC
((.((((((((((((((((((..(.((((((((...)))))))).)..)))))))))))))))))).))..

Structure

--  A                  ac g        a 
  CU GUCUUUCCCCGUUCUACU  a uuuauaua  
  || ||||||||||||||||||  | |||||||| a
  GG UAGAAGGGGGUGGGAUga  u aaaugugu  
CA  G                  ca g        c 

Annotation confidence Not enough data

Genome context

5q: 3438152-3438222 [+]

Mature cin-miR-5596a-5p

• Accession: MIMAT0022315
• Description: Ciona intestinalis cin-miR-5596a-5p mature miRNA
• Sequence: 1 - CUAGUCUUUCCCCGUUCUACU - 21
• Evidence: not_experimental

Mature cin-miR-5596a-3p

• Accession: MIMAT0022316
• Description: Ciona intestinalis cin-miR-5596a-3p mature miRNA
• Sequence: 51 - UAGGGUGGGGGAAGAUGGGAC - 71
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52