Stem-loop zma-MIR444b

Accession

MI0019129

Description

Zea mays zma-MIR444b precursor miRNA

Literature search

8 open access papers mention zma-MIR444b
(12 sentences)

Sequence

1634 reads, 3334 reads per million, 3 experiments

ugacgagcuagaggcagcaacugcauaucuugcaagaaaauugguuuucgaaccauaccgauaauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcug
...((((((.(((((((((((((((((.(((((((((((((((....(((........)))))))))))))))))).))))))))))))))))).))))))...

Structure

uga      a                 u               guuu   aac 
   cgagcu gaggcagcaacugcaua cuugcaagaaaauug    ucg   c
   |||||| ||||||||||||||||| |||||||||||||||    |||    
   gUUCGA CUCUGUUGUUGACGUgu gaacguucuuuuaau    agc   a
guc      A                 u               ----   cau 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR444 family. The primary unspliced transcript contains two exons split by an intron of 7661 nts [1].

Genome context

Unknown

Mature zma-miR444b

• Accession: MIMAT0022262
• Description: Zea mays zma-miR444b mature miRNA
• Sequence: 80 - UGCAGUUGUUGUCUCAAGCUU - 100
• Evidence: not_experimental

References

1. PubMed ID: 21421552
   SplamiR--prediction of spliced miRNAs in plants
   "Thieme CJ, Gramzow L, Lobbes D, Theissen G"
   "Bioinformatics (2011) 27:1215-1223