miRBase entry: sbi-MIR5565d

Stem-loop sbi-MIR5565d


Accession
MI0019109
Description
Sorghum bicolor sbi-MIR5565d precursor miRNA


Sequence

18727 reads, 344.0 reads per million, 50 experiments
gauucACUUCAAUCCAUGUAUGUUGGUGUggguugggguggaauuuaguucaaauucuacuccaauccaccuCAACACAUGUGGAUUGAUGuaaauccgacuacaucaa
((((.((.(((((((((((.((((((.(((((((((((((((((((.....))))))))))))))))))).)))))).))))))))))).)).))))............

Structure
------------    c  U           A      U                   a 
            gauu AC UCAAUCCAUGU UGUUGG GUggguugggguggaauuu g
            |||| || ||||||||||| |||||| ||||||||||||||||||| u
            cuaa uG AGUUAGGUGUA ACAACu caccuaaccucaucuuaaa u
aacuacaucagc    a  U           C      c                   c 


Annotation confidence Low
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Genome context
chr1: 50256006-50256114 [+]

Database links

Mature sbi-miR5565d-5p

Accession MIMAT0022254
Description Sorghum bicolor sbi-miR5565d-5p mature miRNA
Sequence 6 - ACUUCAAUCCAUGUAUGUUGGUGU - 29
Evidence experimental
454 [1]

Mature sbi-miR5565d-3p

Accession MIMAT0056472
Description Sorghum bicolor sbi-miR5565d-3p mature miRNA
Sequence 73 - CAACACAUGUGGAUUGAUG - 91
Evidence experimental
unknown

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468