Stem-loop sbi-MIR5565b

Accession

MI0019108

Description

Sorghum bicolor sbi-MIR5565b precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

46946 reads, 485.0 reads per million, 50 experiments

guagucagauucacAUCAAUCCACAUGUGUUGaggcggguuggagugaaacuggaacuaaauuccacccuaauucacuccAACACAUGUGGAUUGAGGCGAAUCcgaca
...(((.(((((.(.(((((((((((((((((.((.(((((((.(((.................))).))))))).)).))))))))))))))))).).))))).))).

Structure

gua   a     a A                 a  c       a   aaacugg 
   guc gauuc c UCAAUCCACAUGUGUUG gg ggguugg gug       a
   ||| ||||| | ||||||||||||||||| || ||||||| |||       a
   cag CUAAG G AGUUAGGUGUACACAAc uc cuuaauc cac       c
--a   c     C G                 c  a       c   cuuaaau 

Annotation confidence Low

Genome context

chr10: 55635738-55635846 [-]

Mature sbi-miR5565b-5p

• Accession: MIMAT0056471
• Description: Sorghum bicolor sbi-miR5565b-5p mature miRNA
• Sequence: 15 - AUCAAUCCACAUGUGUUG - 32
• Evidence: experimental ; unknown

Mature sbi-miR5565b-3p

• Accession: MIMAT0022253
• Description: Sorghum bicolor sbi-miR5565b-3p mature miRNA
• Sequence: 81 - AACACAUGUGGAUUGAGGCGAAUC - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468