Stem-loop sbi-MIR5565a

Accession

MI0019107

Description

Sorghum bicolor sbi-MIR5565a precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

68392 reads, 716.0 reads per million, 50 experiments

guagucggauccgcaucaaucuACAUGUGUUGGAGUGGAUUGGaguagaaauugaauuaaauuucaccucaauccacuccAACACAUGUGGAUUGAGGCGAAUCcgaca
...(((((((.(((.((((((((((((((((((((((((((((.((.((((((......)))))))).)))))))))))))))))))))))))))).))).))))))).

Structure

gua       c   a                            a  a      ga 
   gucggau cgc ucaaucuACAUGUGUUGGAGUGGAUUGG gu gaaauu  a
   ||||||| ||| |||||||||||||||||||||||||||| || ||||||   
   cagcCUA GCG AGUUAGGUGUACACAAccucaccuaacu ca cuuuaa  u
--a       A   G                            c  -      au 

Annotation confidence Low

Genome context

chr4: 9312555-9312663 [+]

Mature sbi-miR5565a-5p

• Accession: MIMAT0056470
• Description: Sorghum bicolor sbi-miR5565a-5p mature miRNA
• Sequence: 23 - ACAUGUGUUGGAGUGGAUUGG - 43
• Evidence: experimental ; unknown

Mature sbi-miR5565a-3p

• Accession: MIMAT0022252
• Description: Sorghum bicolor sbi-miR5565a-3p mature miRNA
• Sequence: 81 - AACACAUGUGGAUUGAGGCGAAUC - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468