Stem-loop sbi-MIR5568a

Accession

MI0019103

Description

Sorghum bicolor sbi-MIR5568a precursor miRNA

Literature search

2 open access papers mention sbi-MIR5568a
(4 sentences)

Sequence

5208 reads, 221.0 reads per million, 50 experiments

ucccaacauuccAAAUUGUAAGUCGUUCUGGCUUuucuaaguagauugcuguggcuaugcaccuauguauguagaagagcCAGAGCGACUUACAAUUUGGAacaau
........(((((((((((((((((((((((((((((((.(((.((....(((......)))..)).))).)))))))))))))))))))))))))))))))....

Structure

ucccaaca                               a   g  ugcu   gc 
        uuccAAAUUGUAAGUCGUUCUGGCUUuucua gua au    gug  u
        ||||||||||||||||||||||||||||||| ||| ||    |||   
        aAGGUUUAACAUUCAGCGAGACcgagaagau uau ua    cac  a
----uaac                               g   g  --uc   gu 

Annotation confidence Medium

Genome context

chr7: 1926888-1926993 [-]

Mature sbi-miR5568a-5p

• Accession: MIMAT0056466
• Description: Sorghum bicolor sbi-miR5568a-5p mature miRNA
• Sequence: 13 - AAAUUGUAAGUCGUUCUGGCUU - 34
• Evidence: experimental ; unknown

Mature sbi-miR5568a-3p

• Accession: MIMAT0022248
• Description: Sorghum bicolor sbi-miR5568a-3p mature miRNA
• Sequence: 81 - CAGAGCGACUUACAAUUUGGA - 101
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468