Stem-loop sbi-MIR5565c

Accession

MI0019102

Description

Sorghum bicolor sbi-MIR5565c precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

67954 reads, 930.0 reads per million, 50 experiments

gaugUAGUCGGAUUCGCAUCAAUCcacauguguugguguggauuggagugaaacuugaauuaaauuccaccccaauccacUACACAUGUGGAUUGAGGUGAauccg
........(((((((((.(((((((((((((((....(((((((((.(((.................))).))))))))).))))))))))))))).)))))))))

Structure

gaugUAGU         A               uggu         a   aaacuug 
        CGGAUUCGC UCAAUCcacaugugu    guggauugg gug       a
        ||||||||| |||||||||||||||    ||||||||| |||       a
        gccuaAGUG AGUUAGGUGUACACA    caccuaacc cac       u
--------         G               ---U         c   cuuaaau 

Annotation confidence Low

Genome context

chr3: 18477631-18477736 [+]

Mature sbi-miR5565c-5p

• Accession: MIMAT0056465
• Description: Sorghum bicolor sbi-miR5565c-5p mature miRNA
• Sequence: 5 - UAGUCGGAUUCGCAUCAAUC - 24
• Evidence: experimental ; unknown

Mature sbi-miR5565c-3p

• Accession: MIMAT0022247
• Description: Sorghum bicolor sbi-miR5565c-3p mature miRNA
• Sequence: 81 - UACACAUGUGGAUUGAGGUGA - 101
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468