Stem-loop sbi-MIR5567

Accession

MI0019101

Description

Sorghum bicolor sbi-MIR5567 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5567
(4 sentences)

Sequence

240481 reads, 3628.0 reads per million, 50 experiments

uuaucuacauUUAAUGAUUCAUGUAUGUGUCCAAagauucgaugagauggauaaaaaaauuuugauggagaacuaaacagggccuaaggccuuguauaguuuaggucuuguuuaguuccaaaaauuuugcaaaauuuuucagauuccucgucacAUCGAAUCUUUAGACGUAUGCAUGgaguauuaaauauagaugaaaauaaaaauuaauugc
(((((((.((((((((.((((((((((((((.((((((((((((.((((((...((((((((((..((((((((((((((((((((((...........)))))))))))))))))))......)))..)))))))))).....)))..))).)))))))))))).)))))))))))))).)))))))).))))))).................

Structure

-----------------       c        A              C            a   --   --uaa          au   ------                   gccu 
                 uuaucua auUUAAUG UUCAUGUAUGUGUC AAagauucgaug gau  gga     aaaaauuuug  gga      gaacuaaacagggccuaag    u
                 ||||||| |||||||| |||||||||||||| |||||||||||| |||  |||     ||||||||||  |||      |||||||||||||||||||    g
                 aguagau uaaauuau agGUACGUAUGCAG UUUCUAAGCUAc cug  ccu     uuuuuaaaac  uuu      cuugauuuguucuggauuu    u
cguuaauuaaaaauaaa       a        g              A            a   cu   uagac          gu   aaaaac                   gaua 

Annotation confidence Low

Genome context

chr10: 52007869-52008082 [-]

Mature sbi-miR5567-5p

• Accession: MIMAT0022246
• Description: Sorghum bicolor sbi-miR5567-5p mature miRNA
• Sequence: 11 - UUAAUGAUUCAUGUAUGUGUCCAA - 34
• Evidence: experimental ; 454 [1]

Mature sbi-miR5567-3p

• Accession: MIMAT0056464
• Description: Sorghum bicolor sbi-miR5567-3p mature miRNA
• Sequence: 155 - AUCGAAUCUUUAGACGUAUGCAUG - 178
• Evidence: experimental ; unknown

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468