Stem-loop sbi-MIR5566

Accession

MI0019100

Description

Sorghum bicolor sbi-MIR5566 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5566
(2 sentences)

Sequence

593 reads, 34.0 reads per million, 46 experiments

gaguuUCAGCAUCACCUCCCUGUUGUucuccggguacacaaccuccccgucgagacguguauuuggagaacagcgGGGAGGUGCUGCCGAAAUUucgucucagauc
(((((((.(((.(((((((((((((((((((((((((((...(((......)))..))))))))))))))))))))))))))).))).)))))))...........

Structure

-----------       A   U                           aac   cc 
           gaguuUC GCA CACCUCCCUGUUGUucuccggguacac   cuc  c
           ||||||| ||| |||||||||||||||||||||||||||   |||   
           uUUAAAG CGU GUGGAGGGgcgacaagagguuuaugug   gag  g
cuagacucugc       C   C                           -ca   cu 

Annotation confidence Medium

Genome context

chr2: 6668230-6668335 [+]

Mature sbi-miR5566-5p

• Accession: MIMAT0022245
• Description: Sorghum bicolor sbi-miR5566-5p mature miRNA
• Sequence: 6 - UCAGCAUCACCUCCCUGUUGU - 26
• Evidence: experimental ; 454 [1]

Mature sbi-miR5566-3p

• Accession: MIMAT0056463
• Description: Sorghum bicolor sbi-miR5566-3p mature miRNA
• Sequence: 76 - GGGAGGUGCUGCCGAAAUU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468