Stem-loop sbi-MIR5565e

Accession

MI0019098

Description

Sorghum bicolor sbi-MIR5565e precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

30021 reads, 1131.0 reads per million, 50 experiments

uaaacgguaagguuUUGUUUGGAUGUUGUCGGAuucaccucaauccacauguuuuggaguagauuaggguggaauuuaguucaaguuccacuccaauucaccccaauACAUGUGGAUUGAUGCGAAuccaacuacauccaaacaaggccuaaauauaaguguggauaguguagauaaauauagaagagauagauaugaggauggaaaaggauc
.........(((((((((((((((((.((.((((((.(.(((((((((((((.((((.((.((((.(((((((((((.....))))))))))).)))).)).)))).))))))))))))).).)))))).)).)))))))))))))))))...((((..(((......((((......))))......)))..))))................

Structure

------------------------------------------------------uaaacggua                 U  C      a c             u    a  a    a           a 
                                                               agguuUUGUUUGGAUGU GU GGAuuc c ucaauccacaugu uugg gu gauu ggguggaauuu g
                                                               ||||||||||||||||| || |||||| | ||||||||||||| |||| || |||| ||||||||||| u
                                                               uccggaacaaaccuaca ca ccuAAG G AGUUAGGUGUACA aacc ca uuaa cucaccuugaa u
cuaggaaaagguaggaguauagauagagaagauauaaauagaugugauaggugugaauauaaa                 u  a      C U             u    c  c    c           c 

Annotation confidence Low

Genome context

chr9: 6068284-6068496 [+]

Mature sbi-miR5565e-5p

• Accession: MIMAT0022243
• Description: Sorghum bicolor sbi-miR5565e-5p mature miRNA
• Sequence: 15 - UUGUUUGGAUGUUGUCGGA - 33
• Evidence: experimental ; 454 [1]

Mature sbi-miR5565e-3p

• Accession: MIMAT0056461
• Description: Sorghum bicolor sbi-miR5565e-3p mature miRNA
• Sequence: 108 - ACAUGUGGAUUGAUGCGAA - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468