Stem-loop mtr-MIR5554c

Accession

MI0019088

Description

Medicago truncatula mtr-MIR5554c precursor miRNA

Sequence

3366 reads, 32.0 reads per million, 111 experiments

caacaugugaugugcaucuugaacaaugguauUCAAGUGUCAAGGAAUGCACCUCAUUCUUUUGACACUUGAAUACCAUCguugcagaugcucaucgaaugucgg
..((((.(((((.((((((..(((.((((((((((((((((((((((((.....))))).))))))))))))))))))).)))..)))))).))))).))))...

Structure

-ca    g     u      ug   a                   -     C 
   acau ugaug gcaucu  aac augguauUCAAGUGUCAAG GAAUG A
   |||| ||||| ||||||  ||| ||||||||||||||||||| ||||| C
   ugua gcuac cguaga  uug UACCAUAAGUUCACAGUUU CUUAC C
ggc    a     u      cg   C                   U     U 

Annotation confidence Low

Genome context

chr7: 22600323-22600427 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5554c

Mature mtr-miR5554c-5p

• Accession: MIMAT0022225
• Description: Medicago truncatula mtr-miR5554c-5p mature miRNA
• Sequence: 33 - UCAAGUGUCAAGGAAUGCACCUCA - 56
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5554c-3p

• Accession: MIMAT0022226
• Description: Medicago truncatula mtr-miR5554c-3p mature miRNA
• Sequence: 57 - UUCUUUUGACACUUGAAUACCAUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367