Stem-loop pti-MIR5482

Accession

MI0019000

Description

Phaeodactylum tricornutum pti-MIR5482 precursor miRNA

Sequence

gggugacguacgggcgcuggcucguggcagguucggcgugcacuguuaccaacaauagcacgaauuaaauugcgcauugcuauuggguauucaagccacuugacgacauaccgcaaucauucgaaacuagguagucggagcggaaucacgaucacacgaucaccauacccgugcaacguuggccauuccgggucugggcgcagggcggaacgcgugcgacaaacauucaaaauggacguucugcuuuucuuuuuccguugaauuccuacugccuuugugccucggugcuuACAGUAGCGACGACGCCAUUugcuucacua
.((((((((((((((....)))))))(((.((...)).)))..)))))))...........(((.(((((.((((.(((((((((((((((((((...)))))....)))))(((.....((((.((.(((((((.(((((((((....((((....)))).(((.(((((.((.......)).....))))).)))..(.((((((((((((.....................).))))))))))).)...)))))).....))).)))))))..))...)))))))...))))))))).).))).))))).)))....

Structure

gggugacguacgggcgcuggcucguggcagguucggcgugcacuguuaccaacaauagcac   u     u   - a         gguauucaagccacuugacgacauacc   aucau    --a  -u       c   -----      ucacgaucacacgaucaccauacccgugcaacguuggccauuccgggucugggc c           - gugcgacaa 
                                                             gaa uaaau gcg c uugcuauug                           gca     ucga   ac  agguagu gga     gcggaa                                                      g agggcggaacg c         a
                                                             ||| ||||| ||| | |||||||||                           |||     ||||   ||  ||||||| |||     ||||||                                                      | ||||||||||| |         c
                                                             cuu guUUA CGC G AGCGAUGAC                           cgu     ggcu   ug  uccguca ccu     ugccuu                                                      c uuucgucuugc g         a
---------------------------------------------------------auca   c     C   A C         ------------------------Auu   -----    ccg  uu       u   uaagu      ---------------------------------------------------uuu u           a guaaaacuu 

Annotation confidence Not enough data

Genome context

CM000612.1: 128204-128523 [+]

Mature pti-miR5482

• Accession: MIMAT0022115
• Description: Phaeodactylum tricornutum pti-miR5482 mature miRNA
• Sequence: 291 - ACAGUAGCGACGACGCCAUU - 310
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337