Stem-loop pti-MIR5481

Accession

MI0018999

Description

Phaeodactylum tricornutum pti-MIR5481 precursor miRNA

Sequence

cguucgugccaaaugguuucaucguuugugcaguucauucuuugugugaucaacaugcucacuuugggguugucgugcaacuuuaggcgcucacacuuagacgaaauuacaaaaugugauuccaagcuaccaguacgguugcagagaauaaauuuuucgaagcacaggauuuccaucgcauucguaguuguuuuuggcggagcgaggagagacgaucaccacgauucuGAUUUCACAGUCGGUUCAUUAUUaucacgacca
.(.(((((...((((((...((((.(((((.((.(((....((((((((((.(((..((((...))))..))).((((...((((((.(....).)))))).(.(((((((...))))))).)..((.(((.....))).)).(((((.....)))))...)))).(..(((((.((((.(((((...........))))))))))))))..)))))).)))))...))).))))))).))))..))))))..))))).).

Structure

c u     cca      uuc    u     c  u   uucu     -     aacaugcucacuuugggguugucgugcaacuuuaggcgcucacacuuagacgaaauuacaaaaugugauuccaagcuaccaguacgguugcagagaauaaauuuuucgaagcaca ga     a    a     aguu 
 g ucgug   aauggu   aucg uugug ag uca    uugug ugauc                                                                                                                   g  uuucc ucgc uucgu    g
 | |||||   ||||||   |||| ||||| || |||    ||||| |||||                                                                                                                   |  ||||| |||| |||||    u
 c agcac   UUAUUA   UGGC GACAC UU AGu    agcac acuag                                                                                                                   c  agagg agcg aggcg    u
a c     -ua      -CU    U     -  U   -cuu     c     ------------------------------------------------------------------------------------------------------------------- ag     -    -     guuu 

Annotation confidence Not enough data

Genome context

CM000606.1: 1365749-1366009 [+]

Mature pti-miR5481

• Accession: MIMAT0022114
• Description: Phaeodactylum tricornutum pti-miR5481 mature miRNA
• Sequence: 229 - GAUUUCACAGUCGGUUCAUUAUU - 251
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337