Stem-loop pti-MIR5478

Accession

MI0018996

Description

Phaeodactylum tricornutum pti-MIR5478 precursor miRNA

Sequence

agaaagaguccgaacgacagauuucuauuguacaguacggcgcgaaacgguaccgauccggcgugccgacuggauuaggaagaauagguagguagguauacggacugugacuguagaaugcaagcaucuauucccagaucgugagugcuacacaacguuucuaccguauucgccaaccgaccgaacuggguaccuuauucGACAAAGGAAUCGAUCGUAUCGgggaggaaau
........(((((((((..(((((((.((((.((((.(((((((...(((.......))).))))))))))).........((((((((.(((.(((((((((...(.((((((((...((..((((((......)))).))..)).)))))....))).)..))))))..))).))).(((......)))))).))))).)))))))))))..)))).)))))........

Structure

agaaagag     -    ca       a    acaguacggcgcgaaacgguaccgauccggcgugccgacuggauuaggaa     -   ------------a   a   --      acu u   ----     aau  aa  -    au 
        uccga acga  gauuucu uugu                                                  gaaua ggu             ggu ggu  auacgg   g gac    uguag   gc  gc aucu  u
        ||||| ||||  ||||||| ||||                                                  ||||| |||             ||| |||  ||||||   | |||    |||||   ||  || ||||   
        ggGCU UGCU  CUAAGGA AACA                                                  cuuau cca             cca ccg  uaugcc   c uug    acauc   ug  ug uaga  c
uaaaggag     A    AG       -    -------------------------------------------------G     u   ugggucaagccag   a   cu      -au u   caac     --g  ag  c    cc 

Annotation confidence Not enough data

Genome context

CM000625.1: 97534-97765 [+]

Mature pti-miR5478

• Accession: MIMAT0022111
• Description: Phaeodactylum tricornutum pti-miR5478 mature miRNA
• Sequence: 201 - GACAAAGGAAUCGAUCGUAUCG - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337