Stem-loop pti-MIR5473

Accession

MI0018991

Description

Phaeodactylum tricornutum pti-MIR5473 precursor miRNA

Sequence

aguucuacgcUGAGGUAACGGGAUCAAAGGuaguguuuucguaguguuuucgaguguuugaagugaucgcugauuccgauugugccuggguagguagugca
.((.(((((((.(((((.((((((((..(((................((((((....))))))..)))..))))))))....))))).)))..)))).)).

Structure

a  u    --   G     ---A        AA   aguguuuucguagugu      g 
 gu cuac  gcU AGGUA    CGGGAUCA  GGu                uuucga u
 || ||||  ||| |||||    ||||||||  |||                ||||||  
 cg gaug  ugg uccgu    gccuuagu  cua                gaaguu g
a  u    ga   g     guua        cg   --------------gu      u 

Annotation confidence Not enough data

Genome context

CP001141.1: 35406-35506 [-]

Mature pti-miR5473

• Accession: MIMAT0022106
• Description: Phaeodactylum tricornutum pti-miR5473 mature miRNA
• Sequence: 11 - UGAGGUAACGGGAUCAAAGG - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337