Stem-loop pti-MIR5471

Accession

MI0018989

Description

Phaeodactylum tricornutum pti-MIR5471 precursor miRNA

Sequence

ugcucgauugCGAGAAUCGAUACUAAUACGCuguuucaauuguccugcacggucgaaggauuaaaaauucgcugagcccaaaauggacggcucauuucgaucucgacuacgaaauuggagucuuaaaucguaucaacgucuccauuuuugaugaaguucgcaaagggaacaacaaacagauggguacggcgauguuugaagucggcgaaguccucggcgcgcguggaaauacgaaagcaaaaaaauuaaaacguggggguacgauuuuuguucgaauu
...((((..((((((((((.((((....(((.((((.((((....(((.(((((((.((((......(((((((((((..........)))))((((((((.(((....))).)))))))).((((((...(((..(((.(((((((....((..((((.(...).))))..))...))))))).)))..)))))))))....))))))))))))))).))((((....))))...)))....)))).)))))))..))))))))))))))))))...

Structure

ugc    uu          A    AAUA   u    c    gucc   --------------a  -     a    uaaaaa      gagcccaaaauggacggcucauuucgaucucgacuacgaaauuggaguc      cgu   aa   c       uuga  aa    g a 
   ucga  gCGAGAAUCG UACU    CGC guuu aauu    ugc               cg gucga ggau      uucgcu                                                 uuaaau   auc  cgu uccauuu    ug  guuc c  
   ||||  |||||||||| ||||    ||| |||| ||||    |||               || ||||| ||||      ||||||                                                 ||||||   |||  ||| |||||||    ||  |||| | a
   agcu  uguuuuuagc augg    gug caaa uuaa    acg               gc cggcu ccug      aagcgg                                                 aguuug   uag  gca ggguaga    ac  caag g  
uua    --          -    --gg   -    a    aaaa   aaagcauaaaggugc  g     -    ------      ---------------------------------------------cuga      ---   cg   u       -caa  aa    g a 

Annotation confidence Not enough data

Genome context

CM000605.1: 1604545-1604822 [-]

Mature pti-miR5471

• Accession: MIMAT0022104
• Description: Phaeodactylum tricornutum pti-miR5471 mature miRNA
• Sequence: 11 - CGAGAAUCGAUACUAAUACGC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337