miRBase entry: aca-mir-5408a

Stem-loop aca-mir-5408a

Accession

MI0018911

Description

Anolis carolinensis aca-mir-5408a precursor miRNA

Sequence

agaggguuuggacuCUAUCUCCCAUAAUGCUUAGCcguagcuccgaguggcUAAGACUUCUGGGAGUUGAAGuuccaacccccu
((.(((((.(((((.((.((((((.((..(((((((((........)))))))))..)).)))))).)).))))).))))).))

Structure

  a     u     C  U      U  UG         agc 
ag ggguu ggacu UA CUCCCA AA  CUUAGCcgu   u
|| ||||| ||||| || |||||| ||  |||||||||    
uc cccaa cuuGA GU GAGGGU UU  GAAUcggug   c
  c     c     A  U      C  CA         agc

Annotation confidence Not enough data

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Genome context

GL343282.1: 1472516-1472599 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aca-mir-5408a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-5408a-5p

Accession	MIMAT0022024
Description	Anolis carolinensis aca-miR-5408a-5p mature miRNA
Sequence	15 - CUAUCUCCCAUAAUGCUUAGC - 35
Evidence	experimental Illumina [1]

Mature aca-miR-5408a-3p

Accession	MIMAT0022025
Description	Anolis carolinensis aca-miR-5408a-3p mature miRNA
Sequence	52 - UAAGACUUCUGGGAGUUGAAG - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107