miRBase entry: aca-mir-5407

Stem-loop aca-mir-5407

Accession

MI0018910

Description

Anolis carolinensis aca-mir-5407 precursor miRNA

Sequence

gacgguucugucUUUCGGAUUUUCAGUCACAGUUuccuuuguucuggcgUCUGUGUGGGAUAAUCCGAAagagaaacccuu
...((((.(.(((((((((((.((...(((((...((........))...)))))...)).))))))))))).)))))...

Structure

gac    c g           U  AGU     UUu  uuu 
   gguu u ucUUUCGGAUU UC   CACAG   cc   g
   |||| | ||||||||||| ||   |||||   ||    
   ccaa a agaAAGCCUAA AG   GUGUC   gg   u
uuc    - g           U  GGU     Ugc  ucu

Annotation confidence Not enough data

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Genome context

GL343282.1: 1475305-1475385 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aca-mir-5407

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-5407-5p

Accession	MIMAT0022022
Description	Anolis carolinensis aca-miR-5407-5p mature miRNA
Sequence	13 - UUUCGGAUUUUCAGUCACAGUU - 34
Evidence	experimental Illumina [1]

Mature aca-miR-5407-3p

Accession	MIMAT0022023
Description	Anolis carolinensis aca-miR-5407-3p mature miRNA
Sequence	50 - UCUGUGUGGGAUAAUCCGAA - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107