Stem-loop aca-mir-449c

Accession

MI0018905

Description

Anolis carolinensis aca-mir-449c precursor miRNA

Sequence

gugaugguuUGGCAGUGUACUCUUAGUUAGCUguuguauauauuacaGCAACUAAAUACACUUCCAUAuuauugc
((((((((.(((.((((((...((((((.(((((..........))))))))))).)))))).))).))))))))

Structure

        u   C      CUC      A     ugua 
gugauggu UGG AGUGUA   UUAGUU GCUgu    u
|||||||| ||| ||||||   |||||| |||||     
cguuauuA ACC UCACAU   AAUCAA CGaca    a
        U   U      --A      -     uuau 

Annotation confidence Not enough data

Genome context

chr2: 2666231-2666305 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-449c

Mature aca-miR-449c-5p

• Accession: MIMAT0022014
• Description: Anolis carolinensis aca-miR-449c-5p mature miRNA
• Sequence: 10 - UGGCAGUGUACUCUUAGUUAGCU - 32
• Evidence: experimental ; Illumina [1]

Mature aca-miR-449c-3p

• Accession: MIMAT0022015
• Description: Anolis carolinensis aca-miR-449c-3p mature miRNA
• Sequence: 48 - GCAACUAAAUACACUUCCAUA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107