Stem-loop aca-mir-5397

Accession

MI0018899

Description

Anolis carolinensis aca-mir-5397 precursor miRNA

Sequence

aguuguucgcagcucucauguUACGCAGAAGUUUGCUUCAUCAggcugaauaugcccugcCUGGUAAAGCCUUCUGCCUAAccugcaagcuugcaagcuuc
....(((.((((((..((.((((.(((((((...((((.(((((((.(........).))))))).))))))))))).)))).))..))).))).)))...

Structure

aguu   c   -   cu  u    C       UUU    C       u aau 
    guu gca gcu  ca guUA GCAGAAG   GCUU AUCAggc g   a
    ||| ||| |||  || |||| |||||||   |||| ||||||| |    
    cga cgu cga  gu cAAU CGUCUUC   CGAA UGGUCcg c   u
-cuu   a   u   ac  c    C       ---    A       u ccg 

Annotation confidence Not enough data

Genome context

chr2: 92804639-92804739 [+]

Mature aca-miR-5397-5p

• Accession: MIMAT0022004
• Description: Anolis carolinensis aca-miR-5397-5p mature miRNA
• Sequence: 22 - UACGCAGAAGUUUGCUUCAUCA - 43
• Evidence: experimental ; Illumina [1]

Mature aca-miR-5397-3p

• Accession: MIMAT0022005
• Description: Anolis carolinensis aca-miR-5397-3p mature miRNA
• Sequence: 61 - CUGGUAAAGCCUUCUGCCUAA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107