miRBase entry: aca-mir-429

Stem-loop aca-mir-429

Accession

MI0018866

Description

Anolis carolinensis aca-mir-429 precursor miRNA

Sequence

auucccaccgccugcugaucgcuGUCUUACCAGACAAAGUUAGAucuuagcuauccccgucUAAUACUGUCUGGUAAUGCCGUcgaucgcauuggcaaug
.........((((((.((((((.((.((((((((((..(((((((.............)))))))..)))))))))).)).).))))))))..)))....

Structure

auucccacc   --   u     - u  C          AA       cuuag 
         gcc  ugc gaucg c GU UUACCAGACA  GUUAGAu     c
         |||  ||| ||||| | || ||||||||||  |||||||     u
         cgg  acg cuagc G CG AAUGGUCUGU  UAAUcug     a
-----guaa   uu   -     U C  U          CA       ccccu

Annotation confidence Not enough data

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Genome context

GL343647.1: 283324-283423 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-429

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-429-5p

Accession	MIMAT0021956
Description	Anolis carolinensis aca-miR-429-5p mature miRNA
Sequence	24 - GUCUUACCAGACAAAGUUAGA - 44
Evidence	experimental Illumina [1]

Mature aca-miR-429-3p

Accession	MIMAT0021957
Description	Anolis carolinensis aca-miR-429-3p mature miRNA
Sequence	62 - UAAUACUGUCUGGUAAUGCCGU - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107