miRBase entry: aca-mir-34c

Stem-loop aca-mir-34c

Accession

MI0018859

Description

Anolis carolinensis aca-mir-34c precursor miRNA

Sequence

ugguuuguAGGCAGUGUAGUUAGCUGAUUGugagguuuccuuggcAAUCACUAGCUUUACUGUCAUcaaaaca
((..(((..(((((((.((((((.(((((((.(((....))).))))))))))))).)))))))..)))..))

Structure

  gu   uA       U      C       g   u 
ug  uug  GGCAGUG AGUUAG UGAUUGu agg u
||  |||  ||||||| |||||| ||||||| |||  
ac  aac  CUGUCAU UCGAUC ACUAAcg uuc u
  aa   UA       U      -       g   c

Annotation confidence Not enough data

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Genome context

GL343521.1: 197479-197551 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-34c-5p

Accession	MIMAT0021943
Description	Anolis carolinensis aca-miR-34c-5p mature miRNA
Sequence	9 - AGGCAGUGUAGUUAGCUGAUUG - 30
Evidence	experimental Illumina [1]

Mature aca-miR-34c-3p

Accession	MIMAT0021944
Description	Anolis carolinensis aca-miR-34c-3p mature miRNA
Sequence	46 - AAUCACUAGCUUUACUGUCAU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107