miRBase entry: aca-mir-2970

Stem-loop aca-mir-2970

Accession

MI0018839

Description

Anolis carolinensis aca-mir-2970 precursor miRNA

Sequence

agaucugucacugcaGACAGUCAGUAGUUGGUCUGGcauaagcagaaaguuUCAGAUCACCUCUUGGCUGUGAguaguguggagcc
...((((.((((((..((((((((.((.((((((((....(((.....))))))))))).)).))))))))..))))))))))...

Structure

aga    u      aG        U  U        caua   a 
   ucug cacugc  ACAGUCAG AG UGGUCUGG    agc g
   |||| ||||||  |||||||| || ||||||||    ||| a
   aggu gugaug  UGUCGGUU UC ACUAGACU    uug a
ccg    -      AG        C  C        ----   a

Annotation confidence Not enough data

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Genome context

chr2: 187861413-187861498 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-2970

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-2970-5p

Accession	MIMAT0021909
Description	Anolis carolinensis aca-miR-2970-5p mature miRNA
Sequence	16 - GACAGUCAGUAGUUGGUCUGG - 36
Evidence	experimental Illumina [1]

Mature aca-miR-2970-3p

Accession	MIMAT0021910
Description	Anolis carolinensis aca-miR-2970-3p mature miRNA
Sequence	52 - UCAGAUCACCUCUUGGCUGUGA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107